{"id":51,"date":"2010-10-12T19:41:00","date_gmt":"2010-10-12T11:41:00","guid":{"rendered":"http:\/\/www.pufengdu.org\/srv\/blog\/?p=51"},"modified":"2014-11-08T19:50:55","modified_gmt":"2014-11-08T11:50:55","slug":"%e7%94%9f%e7%89%a9%e4%bf%a1%e6%81%af%e5%ad%a6%e7%a7%91%e7%a0%94%e9%a1%b9%e7%9b%ae%e4%b8%ad%e7%9a%84%e6%96%87%e4%bb%b6%e7%ae%a1%e7%90%86","status":"publish","type":"post","link":"https:\/\/www.pufengdu.org\/blog\/?p=51","title":{"rendered":"\u751f\u7269\u4fe1\u606f\u5b66\u79d1\u7814\u9879\u76ee\u4e2d\u7684\u6587\u4ef6\u7ba1\u7406"},"content":{"rendered":"

\u751f\u7269\u4fe1\u606f\u5b66\u7684\u79d1\u7814\u5b9e\u9645\u4e0a\u5c31\u662f\u5728\u8ba1\u7b97\u673a\u4e0a\u8fdb\u884c\u7684\u79d1\u7814\u3002\u5404\u79cd\u6587\u4ef6\u7684\u7ba1\u7406\u5176\u5b9e\u662f\u4e2a\u5f88\u91cd\u8981\u7684\u4e8b\u60c5\u3002\u4e71\u4e03\u516b\u7cdf\u7684\u6587\u4ef6\u4e0d\u4f46\u4f1a\u5f71\u54cd\u7814\u7a76\u8fdb\u5ea6\u548c\u6548\u7387\uff0c\u8fd8\u6709\u53ef\u80fd\u9020\u6210\u610f\u60f3\u4e0d\u5230\u7684\u9519\u8bef\u548c\u635f\u5931\u3002\u5728\u8fc7\u53bb\u516d\u5e74\u7684\u79d1\u7814\u8fc7\u7a0b\u4e2d\uff0c\u6211\u9010\u6e10\u603b\u7ed3\u51fa\u4e86\u4e00\u5957\u9002\u7528\u4e8e\u81ea\u5df1\u7684\u6587\u4ef6\u7ba1\u7406\u65b9\u5f0f\u3002\u8fd9\u5957\u73a9\u610f\u4e0d\u4e00\u5b9a\u9002\u7528\u6bcf\u4e00\u4e2a\u4eba\uff0c\u4e0d\u8fc7\uff0c\u6211\u60f3\uff0c\u7ed9\u522b\u4eba\u770b\u770b\u65e0\u4f24\u5927\u96c5\u5427\u3002<\/p>\n

\u5bf9\u4e8e\u4e00\u4e2a\u4e00\u822c\u7684\u751f\u7269\u4fe1\u606f\u5b66\u9879\u76ee\uff0c\u90fd\u8981\u5355\u72ec\u5efa\u7acb\u4e00\u4e2a\u6587\u4ef6\u5939\uff0c\u91cc\u9762\u7684\u7ed3\u6784\u5927\u7ea6\u662f\u8fd9\u4e2a\u6837\u5b50\u7684\uff0c\u5f53\u7136\u4e0d\u53ef\u80fd\u6bcf\u4e2a\u90fd\u4e00\u6837\u5566\u3002\u7565\u5fae\u5077\u5077\u61d2\u4e5f\u662f\u5141\u8bb8\u7684\u8bf6\uff0c\u53ea\u8981\u522b\u628a\u81ea\u5df1\u641e\u4e71\u4e86\u5c31\u53ef\u4ee5\u4e86<\/p>\n

\r\nSMC\r\n|------ src\r\n|------ dat\r\n|------ bin\r\n|------ log\r\n|------ bak\r\n|------ doc\r\n|------ ref\r\n|------ TODO.TXT\r\n|------ STATUS.TXT\r\n|------ META.TXT\r\n<\/pre>\n
SMC\uff1a\u9879\u76ee\u6839\u76ee\u5f55\uff0c\u5c31\u662f\u4f60\u81ea\u5df1\u559c\u6b22\u7684\u9879\u76ee\u4ee3\u53f7\u5566\uff0c\u4f8b\u5982\u6211\u66fe\u7ecf\u7528\u8fc7\u7684\u4ee3\u53f7\uff1aCURE\uff0cPURE\uff0cSAIR\uff0cMAIRE……<\/p>\n
src\uff1a\u9879\u76ee\u7684\u6e90\u7a0b\u5e8f\uff0c\u811a\u672c\uff0c\u6279\u5904\u7406\u6587\u4ef6\u7b49\u7684\u76ee\u5f55<\/p>\n
bin\uff1a\u53ef\u6267\u884c\u7a0b\u5e8f\uff0c.class\u6587\u4ef6\u7b49<\/p>\n
dat\uff1a\u9879\u76ee\u7684\u5404\u79cd\u6570\u636e\u6587\u4ef6\uff0c\u4e2d\u95f4\u7ed3\u679c\uff0c\u4e34\u65f6\u6d4b\u8bd5\u7b49\u7b49\u7b49\uff0c\u8fd9\u4e2a\u662f\u6700\u4e71\u7684\u76ee\u5f55\u5566<\/p>\n
log\uff1a\u8bb0\u5f55\u9879\u76ee\u4e2d\u7684\u5404\u79cd\u95ee\u9898\uff0c\u6570\u636e\u5904\u7406\u4e2d\u5220\u6389\u54ea\u4e9b\u6570\u636e\uff0c\u4e3a\u4ec0\u4e48\u5220\u9664\uff0c\u6574\u7406\u4e86\u54ea\u4e9b\u7ed3\u679c\uff0c\u4e3a\u5565\u90a3\u4e48\u6574\u7406\u7684…..\u603b\u4e4b\uff0c\u76ee\u7684\u662f\u4e3a\u4e86\u8ba9\u81ea\u5df1\uff0c\u6ce8\u610f\u662f\u81ea\u5df1\uff0c\u660e\u767d\u81ea\u5df1\u90fd\u5e72\u4e86\u4ec0\u4e48\uff0c\u5373\u4fbf\u662f\u5728\u68a6\u6e38\u72b6\u6001\u4e0b\u5e72\u7684\u3002\u8fd9\u4e2a\u73a9\u610f\u7684\u76ee\u7684\u5728\u4e8e\u5efa\u7acb\u4e00\u4e2a\u57fa\u672c\u5b8c\u6574\u7684undo\/redo\u7684\u673a\u5236\u3002<\/p>\n
bak\uff1a\u9879\u76ee\u8fc7\u7a0b\u4e2d\u9700\u8981\u5220\u9664\uff0c\u4f46\u53c8\u4e0d\u6653\u5f97\u4f1a\u4e0d\u4f1a\u540e\u6094\u7684\u90e8\u5206\uff0c\u6211\u60f3\u4f60\u61c2\u5f97<\/p>\n
doc\uff1apaper\u5c31\u662f\u4ece\u8fd9\u4e2a\u91cc\u9762\u8bde\u751f\u7684\u5566<\/p>\n
ref\uff1aEndNote\u6587\u4ef6\u548c\u4e00\u5927\u5806\u7684PDF\uff0c\u4f60\u77e5\u9053\u8fd9\u662f\u4ec0\u4e48\u5566<\/p>\n
TODO.TXT\uff1a\u4f60\u4e0d\u60f3\u660e\u5929\u65e9\u6668\u8d77\u5e8a\u540e\u518d\u56de\u5fc6\u6628\u5929\u665a\u4e0a\u90fd\u89c9\u5f97\u81ea\u5df1\u4eca\u5929\u9700\u8981\u5e72\u5565\u5427\uff1f\u8fd9\u4e2a\u6587\u4ef6\u5c31\u662f\u5e72\u8fd9\u4e2a\u4e8b\u60c5\u7528\u7684\u3002<\/p>\n
STATUS.TXT\uff1a\u4e2d\u6b62\u4e00\u4e2a\u9879\u76ee\u4ee5\u540e\uff0c\u4f60\u786e\u5b9a\u4f60\u4e00\u5b9a\u4e0d\u4f1a\u53c8\u6765\u641e\u5b83\u5417\uff1f\u5c24\u5176\u662f\u57283\u5e74\u4ee5\u540e\uff1f\u8fd9\u4e2a\u6587\u4ef6\u662f\u7528\u6765\u786e\u5b9a\u4e00\u4e2a\u9879\u76ee\u7a76\u7adf\u662f\u4e3a\u4ec0\u4e48\u4e0d\u505a\u4e86\u7684\uff0c\u4ee5\u53ca\u662f\u4e0d\u662f\u505a\u5b8c\u4e86\uff0c\u8981\u4e0d\u7136dejavu\u7684\u6b21\u6570\u591a\u4e86\uff0c\u5f88\u6d6a\u8d39\u65f6\u95f4\u7684\u3002<\/p>\n
META.TXT\uff1a\u8fd9\u4e2a\u9879\u76ee\u7684\u4e00\u4e9b\u5143\u6570\u636e\uff0c\u4f8b\u5982\uff0c\u4e3a\u5565\u5b83\u53ebSMC\uff1f<\/p>\n
\u63a5\u7740\uff0c\u6709\u4e86\u76ee\u5f55\u7ed3\u6784\u4ee5\u540e\uff0c\u4e0b\u9762\u7684\u95ee\u9898\u5c31\u662f\u7ec4\u7ec7\u90a3\u4e9b\u4e71\u4e03\u516b\u7cdf\u7684\u6570\u636e\u548c\u4ee3\u7801\uff0c\u4ed6\u4eec\u771f\u7684\u662f\u4e71\u4e03\u516b\u7cdf\u7684\u3002\u4f8b\u5982\u4f60\u7684\u539f\u59cb\u6570\u636e\u6587\u4ef6\u662fsmc.txt\uff0c\u53bb\u9664\u4e86\u91cd\u590d\u6570\u636e\u4ee5\u540e\uff0c\u5c31\u547d\u540d\u6210smc_nodup.txt\uff0c\u518d\u7ecf\u8fc7\u53cd\u5411\u4e92\u8865\u4ee5\u540e\uff0c\u5c31\u5f97\u662fsmc_nodup_rc.txt\uff0c\u6587\u4ef6\u540d\u7684\u6bcf\u4e2a\u6bb5\u843d\u8868\u660e\u4e00\u6b21\u5904\u7406\u7684\u76ee\u7684\uff0c\u8fd9\u6837\u53ea\u8981\u770b\u5230\u90a3\u4e9b\u6587\u4ef6\u540d\u548c\u6587\u4ef6\u7684\u751f\u6210\u65f6\u95f4\uff0c\u5c31\u53ef\u4ee5\u77e5\u9053\u4f60\u7684\u6570\u636e\u662f\u600e\u4e48\u5904\u7406\u51fa\u6765\u7684\u3002\u8981\u4e0d\u7136\uff0c3\u5e74\u540e\u53bb\u60f3\u5f53\u65f6\u600e\u4e48\u5904\u7406\u7684\u6570\u636e\uff0c\u90a3\u53ef\u662f\u5f88\u5927\u7684\u4e00\u573a\u707e\u96be\u554a\u3002<\/p>\n
\u4ee3\u7801\u65b9\u9762\u6211\u662fC#+JAVA+Perl+Bash+CPP+VB+VBA…\u53cd\u6b63\u5f88\u591a\u8bed\u8a00\u7684\u8bf4\uff0c\u54e6\uff0c\u5bf9\uff0c\u8fd8\u6709R\u548cMATLAB\uff0c\u6709\u4e9b\u4eba\u8bf4\u751f\u7269\u4fe1\u606f\u5b66\u53ea\u8981 R+Perl\u5c31\u4e07\u4e8b\u5927\u5409\u4e86\uff0c\u4e0d\u8fc7\uff0c\u53ef\u60dc\u7684\u662f\uff0c\u6211\u4e0d\u662fPerl\u5927\u725b\uff0c\u6ca1\u6709\u672c\u4e8b\u7528Perl\u641e\u5b9a\u4e00\u5207\u3002\u4f8b\u5982\u628a\u4eba\u7c7b\u57fa\u56e0\u7ec4\u88c5\u8fdb\u5185\u5b58\u4ec0\u4e48\u7684\uff0c\u5728\u4e0b\u611a\u949d\uff0c\u8fd8\u5f97\u7528CPP \u89e3\u51b3\u3002\u6545\u800c\uff0c\u7ec4\u7ec7\u4ee3\u7801\u662f\u5f88\u91cd\u8981\u7684\u3002\u5982\u679c\u662fVisual Studio\u7684\u8bdd\uff0c\u4f1a\u597d\u5f88\u591a\uff0c\u53ea\u8981\u6ce8\u610f\u4e00\u4e2a\u9879\u76ee\u53ea\u5efa\u4e00\u4e2a\u89e3\u51b3\u65b9\u6848\uff0c\u7136\u540e\u5404\u4e2a\u7a0b\u5e8f\u5206\u522b\u4f5c\u4e0d\u540c\u7684\u9879\u76ee\u5c31\u53ef\u4ee5\u4e86\u3002\u5f53\u7136\uff0c\u628a\u751f\u6210\u76ee\u5f55\u8bbe\u5b9a\u5230bin\u76ee\u5f55\u91cc\u53bb\uff0c\u8fd9\u4e2a\u662f\u5f88\u91cd\u8981\u7684\u3002\u81f3\u4e8eJava\u548cPerl\uff0c\u6211\u4e2a\u4eba\u63a8\u8350Eclipse\u73af\u5883\u6765\u641e\u5b9a\u3002Eclipse+EPIC\u5c31\u662f\u5f88\u597d\u7684\u89e3\u51b3\u65b9\u6848\uff0cWindows\u4e0b\u7684perl\u8fd8\u662f\u7528Strawberry perl\u5427\uff0c\u6bd4Activestate\u7684\u66f4\u65b9\u4fbf\uff0c\u4e3b\u8981\u662f\u6709CPAN\u7684\u8d44\u6e90\u652f\u6301\u5566\uff0c\u4e0d\u9700\u8981\u5230\u5904\u53bb\u627eDBI\/DBD\u7684\u90a3\u4e9bconnector\u4e86\u3002\u8fd9\u6837\u7684\u8bdd\uff0c\u5728\u8fd0\u884c\u7a0b\u5e8f\u7684\u65f6\u5019\uff0c\u5c31\u53ea\u9700\u8981\u5728\u547d\u4ee4\u884c\u7a97\u53e3\u91cc\u4fdd\u6301\u5728dat\u76ee\u5f55\u5c31\u53ef\u4ee5\u4e86\u3002\u7136\u540e\u7528..binXXXXXX.exe\u7684\u65b9\u5f0f\u6765\u8fdb\u884c\u6267\u884c\uff0c\u9700\u8981\u7684\u6587\u4ef6\u4e5f\u5c31\u5728\u5f53\u524d\u76ee\u5f55\u4e0b\u4e86\u3002<\/p>\n
\u867d\u7136\u6211\u4e0d\u662fLinux\u7684\u7c89\u4e1d\uff0c\u4f46\u662f\u6211\u4ecd\u7136\u89c9\u5f97\uff0c\u5373\u4fbf\u662fWindows\uff0c\u4e5f\u8fd8\u662f\u88c5\u4e00\u5957MSYS\u6216\u8005Cygwin\u589e\u5f3a\u4e00\u4e0b\u7684\u597d\uff0c\u5c24\u5176\u662f\u63a8\u8350Cygwin\uff0c\u4ee5\u53ca\u5176\u4e2d\u7684X Server\uff0c\u90a3\u4e2a\u53ef\u4ee5\u76f4\u63a5\u7528\u6765\u8fde\u63a5\u8fdc\u7a0b\u7684X\u684c\u9762\uff0c\u73a9Cluster\u7684\u65f6\u5019\uff0c\u5f88\u6709\u7528\u7684\u3002Cygwin\u4e00\u5b9a\u8981\u88c5\u5404\u79cdwget\uff0csed\uff0ctr…\u7684\u5de5\u5177\uff0c\u5904\u7406\u751f\u7269\u6570\u636e\uff0c\u592a\u6709\u7528\u4e86\u3002\u591a\u884cfasta\u53d8\u5355\u884c\uff0c\u5c31\u4e00\u884c\u547d\u4ee4\uff1a<\/p>\n
\r\nsed 's\/^>S*\/|&|\/g' {FASTA_FILE_NAME} | tr -d \"rn\" | tr -s \"n\" \"*\" | tr -d \"*\" | sed 's\/|\/n\/g'\r\n<\/pre>\n
\u8fd9\u4e9b\u73a9\u610f\u662f\u76f8\u5f53\u76f8\u5f53\u7684\u597d\u4f7f\u6ef4\u3002<\/p>\n
\u81f3\u4e8e\u600e\u4e48\u7f16\u7a0b\uff0c\u5176\u5b9e\u4e0d\u7528\u6211\u7279\u522b\u8bf4\uff0c\u6211\u76f8\u4fe1\u4f1a\u7f16\u7684\u4eba\u90fd\u4f1a\u7f16\uff0c\u4e0d\u4f1a\u7684\u80af\u5b9a\u90fd\u4e0d\u4f1a\u3002\u4f46\u662f\u7a0b\u5e8f\u91cc\u9762\u4e5f\u6700\u597d\u90fd\u5199\u70b9\u5e9f\u8bdd\uff0c\u4f8b\u5982\u6211\u5728Perl\u7a0b\u5e8f\u91cc\u9762\u4e00\u8fb9\u90fd\u4f1a\u5199\u8fd9\u4e48\u4e24\u884c\u3002<\/p>\n
\r\n# XXXXX.pl - This scirpt is used to XXXXXX\r\n# Usage : XXXXX.pl XXXX File YYYY File ZZZZZ Value\r\n<\/pre>\n
\u4ee5\u9632\u4e07\u4e00\u4f603\u5e74\u540e\u9700\u8981\u8fd9\u4e2a\u7a0b\u5e8f\uff0c\u7136\u540e\u8fde\u600e\u4e48\u5199\u53c2\u6570\u90fd\u5f97\u73b0\u770b\u4ee3\u7801\uff0c\u90a3\u53ef\u771f\u7684\u662f\u707e\u96be\uff0c\u5176\u5b9e\uff0c\u771f\u7684\u7528\u4e0d\u4e863\u5e74\uff0c3\u4e2a\u6708\u8db3\u591f\u4e86\u3002<\/p>\n
\u7ba1\u9053\u64cd\u4f5c\u548c\u6279\u5904\u7406\u662f\u5f88\u91cd\u8981\u7684\uff0c\u5c24\u5176\u662f\u5728\u6709\u4e86Windows PS\u4ee5\u53caWin7\u7684CMD\u6269\u5c55\u4e4b\u540e\uff0c\u7528\u8d77\u6765\u90a3\u662f\u76f8\u5f53\u7684\u6709\u6548\u7387\uff0c\u8fd9\u4e2a\u4e8b\u60c5\u4ee5\u540e\u4e13\u9898\u5199\u5427\uff0c\u5185\u5bb9\u5f88\u591a\u3002<\/p>\n
\u81f3\u4e8epaper\u600e\u4e48\u5199\uff0c\u5176\u5b9e\u6211\u89c9\u5f97\u4e3b\u8981\u8fd8\u662f\u5148\u628a\u6846\u67b6\u642d\u597d\u4e86\uff0c\u7136\u540e\u8fb9\u5199\u8fb9\u6539\u7684\u597d\u3002\u8fd9\u4e2a\u4e5f\u5f97\u4ee5\u540e\u4e13\u9898\u5199\u3002<\/p>\n
\u55ef\uff0c\u6587\u4ef6\u7ba1\u7406\u65b9\u9762\u7684\u5c31\u8fd9\u6837\u5427\uff0c\u60f3\u8d77\u6765\u518d\u8865\u3002<\/p>\n","protected":false},"excerpt":{"rendered":"
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